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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
261
single cell RNA-seq
236
total RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
499
Transcription
418
DNA accessibility
241
DNA binding
79
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
165
August, 2021
90
February, 2023
56
September, 2020
54
May, 2022
47
September, 2023
25
February, 2020
18
February, 2021
14
October, 2019
9
April, 2020
4
July, 2018
4
May, 2021
4
May, 2023
2
March, 2020
2
March, 2023
2
May, 2020
1
December, 2019
1
November, 2018
1
September, 2018
Available data
1415
tsv
bam
1275
bigWig
356
fastq
72
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
497
Homo sapiens
Biosample type
304
tissue
184
primary cell
11
cell line
in vitro differentiated cells
stem cell
Organ
113
kidney
96
heart
67
pancreas
55
epithelium
31
liver
19
eye
12
brain
9
blood vessel
9
lung
9
vasculature
4
artery
4
bone element
4
skeleton
3
adipose tissue
3
connective tissue
3
limb
3
musculature of body
1
nerve
1
spinal cord
Project
257
AMP
177
HPAP
47
KPMP
9
LungMap
7
T1D
2
community
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
177
Klaus Kaestner, Upenn
166
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
5
audit script error
1
inconsistent ontology term
biosample_type!
stem cell
in vitro differentiated cells
files.file_type!
bam
BIOSAMPLE
ASSAY
499 results
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Clear Filters
single cell RNA-seq
total RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
49
islet of Langerhans
26
liver
1
20
heart left ventricle
18
left cardiac atrium
18
+ See 46 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
+ See 4 more…
cell line
HepG2
9
EndoC-BH1
1
1
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