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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
single cell RNA-seq
59
total RNA-seq
Assay category
707
DNA binding
118
Transcription
41
DNA accessibility
11
DNA methylation
1
3D chromatin structure
Date released
39
February, 2023
22
September, 2020
15
February, 2018
12
February, 2021
11
July, 2018
10
April, 2018
5
January, 2019
2
June, 2018
1
November, 2018
1
September, 2018
Available data
1136
tsv
996
bigWig
994
bam
118
fastq
66
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
118
Homo sapiens
Biosample type
98
primary cell
15
in vitro differentiated cells
5
cell line
Organ
pancreas
147
epithelium
5
liver
4
embryo
3
connective tissue
Project
73
HPAP
45
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
73
Klaus Kaestner, Upenn
45
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
stem cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
118 results
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single cell RNA-seq
total RNA-seq
primary cell
exocrine cell
39
Langerhans cell
34
pancreatic cell
9
mesenchymal cell
6
endothelial cell
2
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
cell line
HepG2
5
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