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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
50
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
50
DNA binding
Target of assay
23
histone
23
histone modification
19
transcription factor
12
narrow histone mark
11
broad histone mark
8
control
2
RNA binding protein
Date released
33
August, 2017
12
December, 2017
3
August, 2021
2
September, 2017
Available data
1575
bam
1348
bigWig
1283
bed narrowPeak
854
fastq
801
bigBed narrowPeak
398
tagAlign
114
bed broadPeak
79
bigBed broadPeak
50
bed bed3+
3
tar
1
tagAlign bed3+
Organism
50
Homo sapiens
Biosample type
28
tissue
19
in vitro differentiated cells
3
primary cell
stem cell
Organ
21
pancreas
11
connective tissue
6
liver
4
adipose tissue
3
embryo
3
epithelium
Project
50
AMP
Genome assembly (visualization)
50
GRCh38
50
hg19
Lab
50
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
8
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
primary cell
hepatocyte
3
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