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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
50
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
50
DNA binding
4
DNA accessibility
Target of assay
23
histone
23
histone modification
19
transcription factor
12
narrow histone mark
11
broad histone mark
8
control
2
RNA binding protein
Date released
33
August, 2017
12
December, 2017
4
February, 2023
3
August, 2021
2
September, 2017
Available data
1750
bam
1601
bed narrowPeak
1524
bigWig
915
fastq
828
bigBed narrowPeak
398
tagAlign
116
bed broadPeak
79
bigBed broadPeak
64
xls
54
bed bed3+
39
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
3
tar
3
txt
1
tagAlign bed3+
Organism
54
Homo sapiens
Biosample type
28
tissue
23
in vitro differentiated cells
3
primary cell
stem cell
Organ
21
pancreas
15
connective tissue
6
liver
4
adipose tissue
3
embryo
3
epithelium
Project
54
AMP
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
8
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 2 more…
primary cell
hepatocyte
3
See all biosamples
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