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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
36
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
36
DNA binding
Target of assay
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
9
transcription factor
8
control
1
RNA binding protein
Date released
19
August, 2017
12
December, 2017
3
August, 2021
2
September, 2017
Available data
1487
bam
1302
bigWig
1275
bed narrowPeak
786
bigBed narrowPeak
765
fastq
394
tagAlign
112
bed broadPeak
79
bigBed broadPeak
36
bed bed3+
3
tar
1
tagAlign bed3+
Organism
36
Homo sapiens
Biosample type
19
in vitro differentiated cells
14
tissue
3
primary cell
stem cell
Organ
11
pancreas
7
connective tissue
6
liver
3
embryo
3
epithelium
Project
36
AMP
Genome assembly (visualization)
36
GRCh38
36
hg19
Lab
36
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
biosample_type!
stem cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
tissue
islet of Langerhans
11
liver
3
primary cell
hepatocyte
3
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