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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
42
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
42
DNA binding
Target of assay
19
histone
19
histone modification
15
transcription factor
12
narrow histone mark
8
control
7
broad histone mark
2
RNA binding protein
Date released
29
August, 2017
8
December, 2017
3
August, 2021
2
September, 2017
Available data
1521
bam
1334
bigWig
1271
bed narrowPeak
800
fastq
770
bigBed narrowPeak
387
tagAlign
101
bed broadPeak
66
bigBed broadPeak
42
bed bed3+
3
tar
1
tagAlign bed3+
Organism
42
Homo sapiens
Biosample type
28
tissue
11
in vitro differentiated cells
3
primary cell
stem cell
Organ
21
pancreas
7
connective tissue
6
liver
4
adipose tissue
3
epithelium
2
embryo
Project
42
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
42
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
inconsistent control read length
biosample_type!
stem cell
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
3
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
primary cell
hepatocyte
3
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