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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
Assay category
50
DNA binding
Target of assay
27
histone
27
histone modification
23
transcription factor
14
narrow histone mark
13
broad histone mark
12
chromatin remodeller
5
RNA binding protein
1
recombinant protein
Date released
17
November, 2017
16
August, 2017
9
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
50
bam
50
bed narrowPeak
50
bigWig
50
fastq
29
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
tagAlign
8
bed bed3+
Organism
50
Homo sapiens
Biosample type
22
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
stem cell
Organ
23
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
50
AMP
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
50
inconsistent control read length
7
inconsistent control run_type
4
inconsistent assembly
biosample_type!
stem cell
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
cell line
HepG2
22
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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