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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
890
total RNA-seq
484
ChIP-seq
150
DNase-seq
119
ATAC-seq
15
small RNA-seq
10
WGBS
Assay category
905
Transcription
484
DNA binding
269
DNA accessibility
10
DNA methylation
Target of assay
400
histone modification
399
histone
214
narrow histone mark
185
broad histone mark
81
transcription factor
17
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
158
August, 2017
154
October, 2019
136
June, 2019
116
July, 2018
77
May, 2019
64
August, 2021
57
November, 2017
45
October, 2018
44
July, 2019
39
November, 2019
36
December, 2017
36
May, 2021
22
November, 2018
18
April, 2019
14
October, 2017
12
May, 2023
7
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1587
bam
1556
bigWig
904
tsv
711
bed narrowPeak
467
bigBed narrowPeak
280
fastq
177
bed bed3+
164
bed broadPeak
149
bigBed broadPeak
116
tagAlign
64
xls
10
bed bedMethyl
10
bigBed bedMethyl
1
tagAlign bed3+
Organism
1662
Homo sapiens
Biosample type
1668
tissue
526
primary cell
400
cell line
264
in vitro differentiated cells
stem cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1666
AMP
2
T1D
Genome assembly (visualization)
1668
GRCh38
1642
hg19
Lab
1590
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
organ_slims!
heart
BIOSAMPLE
ASSAY
1668 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
1
22
liver
147
75
2
1
kidney
20
13
75
bone tissue
58
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