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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
565
ChIP-seq
259
ATAC-seq
177
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
565
DNA binding
468
DNA accessibility
36
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
narrow histone mark
299
broad histone mark
179
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
37
March, 2020
25
February, 2020
25
May, 2024
20
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1642
bam
1490
bigWig
1075
tsv
706
bed narrowPeak
442
bigBed narrowPeak
327
fastq
198
bed bed3+
197
bed broadPeak
175
bigBed broadPeak
157
txt
128
tagAlign
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2423
Homo sapiens
Biosample type
2430
tissue
973
primary cell
643
cell line
339
in vitro differentiated cells
stem cell
Organ
534
connective tissue
476
adipose tissue
473
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2335
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1594
GRCh38
1504
hg19
Lab
2093
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
organ_slims!
spleen
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2430 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
34
68
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
49
17
75
13
64
6
1
1
1
bone element
84
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