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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1868
ChIP-seq
1474
total RNA-seq
528
ATAC-seq
350
single cell RNA-seq
212
DNase-seq
83
snATAC-seq
75
WGBS
53
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
18
Transcription
Date released
41
May, 2022
30
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
36
bam
35
bigWig
24
tsv
17
bed bedMethyl
17
bigBed bedMethyl
17
fastq
Organism
93
Homo sapiens
Biosample type
49
primary cell
43
tissue
1
cell line
Organ
53
pancreas
47
epithelium
9
adipose tissue
9
connective tissue
9
heart
8
liver
4
brain
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
HPAP
46
AMP
Genome assembly (visualization)
35
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
46
AMP-T2D consortium
biosample_type!
stem cell
files.file_type!
txt
BIOSAMPLE
ASSAY
93 results
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WGBS
small RNA-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
liver
3
1
adipose tissue
3
right lobe of liver
1
2
+ See 18 more…
cell line
HepG2
1
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