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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
27
ATAC-seq
5
FAIRE-seq
5
Hi-C
Assay category
DNA binding
241
DNA accessibility
5
3D chromatin structure
Date released
187
June, 2019
14
September, 2018
13
October, 2019
10
August, 2017
10
November, 2018
6
July, 2019
5
September, 2017
1
November, 2020
Available data
1814
bam
1778
bigWig
1596
tsv
500
fastq
492
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
246
Homo sapiens
Biosample type
184
tissue
56
primary cell
3
cell line
3
in vitro differentiated cells
Organ
80
kidney
42
epithelium
36
brain
36
limb
33
musculature of body
33
pancreas
30
heart
18
ureter
14
connective tissue
14
vasculature
12
blood vessel
7
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
246
AMP
Genome assembly (visualization)
232
GRCh38
223
hg19
Lab
246
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
stem cell
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
246 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 42 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 23 more…
cell line
Panc1
1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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