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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
12
ATAC-seq
Assay category
23
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
10
March, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3389
bam
3166
bigWig
1815
bed narrowPeak
1596
tsv
1354
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
270
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
16
tissue
9
in vitro differentiated cells
7
primary cell
3
cell line
Organ
7
pancreas
6
connective tissue
6
epithelium
4
bone element
4
skeleton
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
brain
1
kidney
Project
31
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
34
hg19
3
GRCh38
Lab
28
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
1
inconsistent replicate
biosample_type!
stem cell
BIOSAMPLE
ASSAY
35 results
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Clear Filters
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 9 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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