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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
1
Hi-C
Assay category
78
DNA accessibility
1
3D chromatin structure
Date released
78
June, 2019
1
August, 2021
Available data
183
bed narrowPeak
144
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
79
Homo sapiens
Biosample type
69
tissue
10
primary cell
Organ
79
kidney
36
limb
36
musculature of body
36
pancreas
35
brain
33
heart
27
connective tissue
27
epithelium
18
ureter
16
vasculature
15
liver
14
blood vessel
6
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
79
AMP
Genome assembly (visualization)
78
GRCh38
72
hg19
Lab
78
AMP-T2D consortium
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
biosample_type!
stem cell
BIOSAMPLE
ASSAY
79 results
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DNase-seq
Hi-C
tissue
kidney
13
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney capillary endothelial cell
1
+ See 3 more…
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