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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
RNA microarray
Assay category
7
DNA binding
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
7
August, 2017
1
August, 2021
1
February, 2023
1
October, 2022
Available data
7
bam
7
fastq
7
tagAlign
6
bed broadPeak
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
1
txt
Organism
Homo sapiens
Biosample type
8
tissue
2
cell line
Organ
8
pancreas
1
adipose tissue
1
connective tissue
1
epithelium
Project
10
AMP
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
10
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
Xin Sun, UCSD
Audit category:
1
inconsistent assembly
biosample_type!
stem cell
audit.ERROR.category!
inconsistent replicate
replicates.library.biosample.donor.organism.scientific_name!
Homo sapiens
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
RNA microarray
tissue
pancreas
7
subcutaneous adipose tissue
1
cell line
EndoC_BH1
1
MIN6
1
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