Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
9
total RNA-seq
5
RRBS
4
Hi-C
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
38
DNA accessibility
12
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
42
October, 2019
26
August, 2017
10
July, 2019
7
May, 2019
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
97
bam
97
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
11
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
134
Homo sapiens
Biosample type
120
tissue
14
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
134
AMP
Genome assembly (visualization)
100
hg19
82
GRCh38
Lab
134
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
biosample_type!
stem cell
month_released!
March, 2020
BIOSAMPLE
ASSAY
134 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
See all biosamples
Download