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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
34
DNase-seq
5
RRBS
4
Hi-C
4
total RNA-seq
3
WGBS
2
ATAC-seq
2
small RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
59
DNA binding
37
DNA accessibility
8
DNA methylation
7
Transcription
4
3D chromatin structure
Target of assay
39
histone
39
histone modification
24
broad histone mark
15
narrow histone mark
14
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
43
June, 2019
26
August, 2017
10
July, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
82
bigWig
79
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
1
txt
Organism
115
Homo sapiens
Biosample type
101
tissue
14
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
115
AMP
Genome assembly (visualization)
83
hg19
67
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
biosample_type!
stem cell
month_released!
March, 2020
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
total RNA-seq
WGBS
ATAC-seq
small RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
spleen
20
1
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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