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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
120
DNA binding
16
Transcription
3
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
5
RNA binding protein
5
transcription factor
Date released
697
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
91
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
61
November, 2019
60
March, 2020
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
December, 2019
7
January, 2018
6
April, 2018
5
March, 2019
4
October, 2022
3
March, 2023
1
August, 2018
1
August, 2022
Available data
120
bam
100
bigWig
97
bed narrowPeak
97
bigBed narrowPeak
19
fastq
Organism
139
Homo sapiens
Biosample type
115
tissue
24
primary cell
Organ
50
blood vessel
50
vasculature
28
brain
24
epithelium
21
heart
21
pancreas
7
limb
7
musculature of body
5
artery
5
kidney
Project
120
AMP
19
HPAP
Genome assembly (visualization)
99
GRCh38
97
hg19
Lab
120
AMP-T2D consortium
19
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
biosample_type!
stem cell
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
total RNA-seq
ATAC-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 6 more…
primary cell
pancreatic alpha cell
15
2
kidney epithelial cell
5
pancreatic beta cell
1
1
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