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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
27
DNase-seq
5
total RNA-seq
4
small RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
163
DNA binding
30
DNA accessibility
9
Transcription
Target of assay
163
histone
163
histone modification
103
narrow histone mark
60
broad histone mark
Date released
76
October, 2019
57
November, 2017
25
June, 2019
25
May, 2019
10
July, 2019
7
October, 2017
2
November, 2018
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
202
Homo sapiens
Biosample type
202
tissue
primary cell
Organ
611
liver
538
connective tissue
431
pancreas
423
adipose tissue
214
heart
202
brain
126
blood vessel
126
vasculature
103
kidney
91
limb
83
artery
70
epithelium
58
bone element
57
musculature of body
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
202
AMP
Genome assembly (visualization)
200
GRCh38
139
hg19
Lab
202
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
biosample_type!
stem cell
primary cell
BIOSAMPLE
ASSAY
202 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
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