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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
13
total RNA-seq
3
ATAC-seq
3
pCHi-C
Assay category
218
DNA binding
35
DNA accessibility
13
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
230
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
16
tsv
1
bed bed3
1
tagAlign bed3+
Organism
269
Homo sapiens
Biosample type
255
tissue
14
primary cell
Organ
940
pancreas
781
liver
665
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
269
AMP
Genome assembly (visualization)
205
GRCh38
147
hg19
Lab
269
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
stem cell
month_released!
July, 2019
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 76 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
astrocyte of the hippocampus
1
brain pericyte
1
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