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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
32
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
130
DNA binding
36
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
106
histone
106
histone modification
64
broad histone mark
42
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
157
bam
143
bigWig
125
bed narrowPeak
124
bigBed narrowPeak
76
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
196
Homo sapiens
Biosample type
175
tissue
21
primary cell
Organ
874
pancreas
771
liver
662
connective tissue
478
adipose tissue
468
epithelium
385
heart
324
kidney
196
brain
189
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
36
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
196
AMP
Genome assembly (visualization)
136
GRCh38
83
hg19
Lab
196
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
biosample_type!
stem cell
month_released!
October, 2019
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
11
14
1
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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