Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
30
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
128
DNA binding
34
DNA accessibility
23
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
108
histone
108
histone modification
67
broad histone mark
41
narrow histone mark
22
control
1
RNA binding protein
1
transcription factor
Date released
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
152
bam
137
bigWig
122
bed narrowPeak
121
bigBed narrowPeak
80
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
25
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
190
Homo sapiens
Biosample type
179
tissue
11
primary cell
Organ
928
pancreas
784
liver
679
connective tissue
490
adipose tissue
489
epithelium
385
heart
324
kidney
200
brain
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
190
AMP
Genome assembly (visualization)
133
GRCh38
76
hg19
Lab
190
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
stem cell
month_released!
October, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
190 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
15
14
1
1
layer of hippocampus
22
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
Download