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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
94
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
2
March, 2020
Available data
211
bam
184
bigWig
tsv
151
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
185
Homo sapiens
Biosample type
162
tissue
14
cell line
9
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
185
AMP
Genome assembly (visualization)
156
GRCh38
118
hg19
Lab
185
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
stem cell
files.file_type!
tsv
BIOSAMPLE
ASSAY
185 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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