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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
Assay category
52
DNA binding
Target of assay
27
histone
27
histone modification
25
transcription factor
14
narrow histone mark
13
broad histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
19
November, 2017
16
August, 2017
9
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
54
bam
54
bigWig
54
fastq
52
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
8
bed bed3+
Organism
52
Homo sapiens
Biosample type
24
cell line
17
in vitro differentiated cells
6
tissue
5
primary cell
stem cell
Organ
25
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
52
AMP
Genome assembly (visualization)
52
hg19
50
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
52
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
stem cell
target.investigated_as!
control
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
cell line
HepG2
24
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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