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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
48
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
230
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
control
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
September, 2018
71
December, 2017
66
April, 2019
60
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
246
bigWig
243
bam
226
tsv
50
fastq
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
273
Homo sapiens
Biosample type
197
tissue
76
primary cell
Organ
163
pancreas
46
epithelium
25
heart
20
connective tissue
15
brain
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
273
AMP
Genome assembly (visualization)
252
hg19
240
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
biosample_type!
stem cell
target.investigated_as!
control
BIOSAMPLE
ASSAY
273 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
1
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 26 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 33 more…
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