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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
83
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
83
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
111
May, 2021
31
August, 2017
28
August, 2021
26
February, 2021
23
February, 2018
16
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
209
bam
179
bigWig
131
tsv
73
fastq
52
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
279
Homo sapiens
Biosample type
1858
tissue
840
primary cell
279
in vitro differentiated cells
241
cell line
stem cell
Organ
60
connective tissue
17
embryo
9
epithelium
liver
2
pancreas
1
adipose tissue
1
heart
Project
279
AMP
Genome assembly (visualization)
218
hg19
185
GRCh38
4
hg18
Lab
245
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
stem cell
target.investigated_as!
histone modification
organ_slims!
liver
BIOSAMPLE
ASSAY
279 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
30
8
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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