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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
19
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
STARR-seq
2
pCHi-C
1
RRBS
1
WGBS
1
whole genome sequencing assay
Assay category
397
DNA binding
19
Transcription
4
DNA accessibility
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
299
transcription factor
82
recombinant protein
62
control
56
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
34
August, 2021
15
December, 2017
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
1
July, 2019
1
May, 2020
1
October, 2019
Available data
393
bam
381
fastq
356
bigWig
328
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
20
tsv
16
tagAlign
6
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
vcf
Organism
427
Homo sapiens
Biosample type
399
cell line
tissue
15
in vitro differentiated cells
13
primary cell
Organ
501
epithelium
436
pancreas
427
liver
136
connective tissue
99
vasculature
93
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
20
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
427
AMP
Genome assembly (visualization)
355
hg19
293
GRCh38
Lab
397
AMP-T2D consortium
30
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
427 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
STARR-seq
pCHi-C
RRBS
WGBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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