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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ATAC-seq
56
snATAC-seq
32
DNase-seq
1
FAIRE-seq
Assay category
576
Transcription
480
DNA binding
331
DNA accessibility
58
DNA methylation
14
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
32
February, 2021
24
February, 2023
24
June, 2019
18
May, 2021
14
September, 2018
12
August, 2021
11
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
5
November, 2019
5
September, 2017
3
September, 2020
2
November, 2020
Available data
132
bam
121
bigWig
91
bed narrowPeak
61
fastq
60
zippedFastqFolder
55
bigBed narrowPeak
31
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
12
tsv
7
bed bedgraph
6
bed bed3
3
txt
1
tar
Organism
331
Homo sapiens
Biosample type
tissue
288
primary cell
43
in vitro differentiated cells
cell line
Organ
91
epithelium
71
pancreas
26
connective tissue
12
kidney
8
blood
8
bodily fluid
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
226
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
150
hg19
94
GRCh38
Lab
216
AMP-T2D consortium
97
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
27
audit script error
25
inconsistent ontology term
biosample_type!
tissue
cell line
BIOSAMPLE
ASSAY
331 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
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