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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
420
transcription factor
389
histone
389
histone modification
198
broad histone mark
190
narrow histone mark
150
control
recombinant protein
86
RNA binding protein
34
chromatin remodeller
2
other context
2
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
2
December, 2018
1
December, 2017
Available data
34
bam
34
bed narrowPeak
34
bigWig
34
fastq
32
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
30
cell line
3
in vitro differentiated cells
tissue
1
primary cell
Organ
21
liver
10
blood
10
bodily fluid
2
connective tissue
1
epithelium
Project
34
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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