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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
19
total RNA-seq
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
DNase-seq
1
RRBS
1
small RNA-seq
Assay category
72
DNA binding
24
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
20
narrow histone mark
17
transcription factor
10
control
5
RNA binding protein
2
chromatin remodeller
Date released
61
August, 2017
12
June, 2019
7
July, 2019
5
February, 2021
4
February, 2023
4
November, 2020
2
April, 2018
2
July, 2018
2
May, 2021
1
August, 2018
1
March, 2020
Available data
93
bam
84
bigWig
58
bed narrowPeak
58
fastq
21
tsv
bed bed3+
16
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
101
Homo sapiens
Biosample type
tissue
71
in vitro differentiated cells
29
primary cell
1
stem cell
Organ
421
liver
397
epithelium
349
pancreas
101
connective tissue
87
vasculature
83
blood vessel
69
heart
68
blood
68
bodily fluid
60
artery
45
kidney
34
embryo
20
vein
13
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
100
AMP
1
T1D
Genome assembly (visualization)
72
hg19
71
GRCh38
Lab
100
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
tissue
assay_title!
ATAC-seq
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
DNase-seq
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
60
5
1
immature adipocyte
2
cardiac fibroblast
1
preadipocyte
1
white fat cell
1
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
1
osteoblast
5
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
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stem cell
mesenchymal stem cell
1
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