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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
3
pCHi-C
Assay category
7
3D chromatin structure
Date released
5
March, 2020
2
October, 2019
1
August, 2018
1
August, 2021
1
November, 2019
Available data
1374
bam
1304
bigWig
790
fastq
763
bed narrowPeak
505
tsv
457
bigBed narrowPeak
160
tagAlign
109
bed broadPeak
109
bigBed broadPeak
64
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
bedpe bed3+
9
hic
5
hdf5
4
tar
2
csv
2
ibed
1
txt
1
vcf
Organism
10
Homo sapiens
Biosample type
tissue
7
in vitro differentiated cells
2
cell line
1
primary cell
Organ
2
epithelium
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
1
pancreas
1
vasculature
1
vein
Project
10
AMP
Genome assembly (visualization)
9
hg19
Lab
9
AMP-T2D consortium
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
tissue
assay_title!
ATAC-seq
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
10 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
endothelial cell of umbilical vein
1
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