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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
13
DNA accessibility
4
3D chromatin structure
Date released
60
February, 2021
4
July, 2019
4
October, 2019
2
June, 2019
1
March, 2020
Available data
67
bam
61
bigWig
54
tsv
13
bed narrowPeak
6
bed bed3+
5
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
71
Homo sapiens
Biosample type
60
cell line
tissue
11
primary cell
Organ
380
epithelium
340
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
58
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
71
AMP
Genome assembly (visualization)
70
hg19
66
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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