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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
total RNA-seq
172
ChIP-seq
85
single cell RNA-seq
59
ATAC-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
6
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
3D chromatin structure
Date released
3
October, 2022
1
August, 2021
1
March, 2023
Available data
5
hic
4
bedpe bed3+
3
cool
Organism
5
Homo sapiens
Biosample type
4
primary cell
tissue
1
cell line
Organ
3
epithelium
3
pancreas
1
liver
Project
3
HPAP
1
AMP
1
ITG
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
3
audit script error
biosample_type!
tissue
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
5 results
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Hi-C
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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