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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
101
ChIP-seq
90
ATAC-seq
74
single cell RNA-seq
47
WGBS
6
MeRIP-seq
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
5
3D chromatin structure
Date released
3
October, 2022
1
November, 2019
1
October, 2019
Available data
4
bedpe bed3+
4
hic
3
cool
1
bed bed3+
1
bigWig
1
hdf5
Organism
5
Homo sapiens
Biosample type
tissue
3
primary cell
2
cell line
Organ
8
epithelium
5
pancreas
4
blood vessel
4
vasculature
3
brain
3
liver
2
vein
1
connective tissue
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
5 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
Panc1
1
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