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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
327
DNA accessibility
Date released
100
May, 2020
60
May, 2022
41
February, 2021
34
May, 2021
24
February, 2023
14
September, 2018
12
August, 2021
8
January, 2021
7
August, 2020
6
November, 2019
6
October, 2019
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
January, 2018
1
November, 2020
Available data
111
bam
93
bigWig
70
bed narrowPeak
60
zippedFastqFolder
59
fastq
24
bigBed narrowPeak
13
tsv
7
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
Organism
327
Homo sapiens
Biosample type
tissue
256
primary cell
42
in vitro differentiated cells
29
cell line
Organ
91
epithelium
90
pancreas
19
connective tissue
9
blood
9
bodily fluid
8
artery
8
blood vessel
8
heart
8
vasculature
2
liver
Project
222
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
139
hg19
76
GRCh38
Lab
212
AMP-T2D consortium
97
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
41
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
tissue
BIOSAMPLE
ASSAY
327 results
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Clear Filters
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 36 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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