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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
56
DNA accessibility
48
DNA methylation
Date released
62
May, 2022
33
February, 2021
8
January, 2021
1
November, 2018
Available data
62
zippedFastqFolder
34
fastq
6
tsv
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
104
Homo sapiens
Biosample type
103
primary cell
tissue
1
cell line
Organ
47
epithelium
47
pancreas
8
blood
8
bodily fluid
1
liver
Project
95
HPAP
8
T1D
1
AMP
Genome assembly (visualization)
1
GRCh38
Lab
95
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
27
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
104 results
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Clear Filters
snATAC-seq
WGBS
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
cell line
HepG2
1
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