Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
ChIP-seq
258
ATAC-seq
106
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
42
WGBS
34
DNase-seq
21
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
106
Transcription
Date released
80
February, 2023
16
September, 2020
8
May, 2021
2
May, 2020
Available data
tsv
383
bigWig
381
bam
140
fastq
2
bed bed3+
Organism
106
Homo sapiens
Biosample type
tissue
97
primary cell
9
in vitro differentiated cells
Organ
53
epithelium
53
pancreas
4
connective tissue
Project
92
HPAP
14
AMP
Genome assembly (visualization)
2
hg19
Lab
92
Klaus Kaestner, Upenn
7
AMP-T2D consortium
7
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
files.file_type!
tsv
BIOSAMPLE
ASSAY
106 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
monocyte
1
+ See 2 more…
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
See all biosamples
Download