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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
total RNA-seq
172
ChIP-seq
85
single cell RNA-seq
59
ATAC-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
6
MeRIP-seq
5
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
204
Transcription
Date released
76
February, 2023
58
May, 2021
45
May, 2020
16
September, 2020
9
August, 2021
Available data
105
tsv
98
bigWig
96
bam
92
fastq
2
bed bed3+
Organism
204
Homo sapiens
Biosample type
190
primary cell
tissue
9
cell line
5
in vitro differentiated cells
Organ
53
epithelium
53
pancreas
9
liver
Project
96
T1D
92
HPAP
16
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
103
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
9
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
biosample_type!
tissue
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
204 results
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total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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