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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
1
DNase-seq
Assay category
17
DNA binding
1
DNA accessibility
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
14
November, 2017
2
August, 2017
2
October, 2019
Available data
310
fastq
229
bam
179
bigWig
153
zippedFastqFolder
84
bed narrowPeak
41
tsv
38
bigBed narrowPeak
30
tagAlign
18
bed broadPeak
18
bigBed broadPeak
14
bed bed3+
13
bedpe bed3+
11
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bedgraph
5
bed bed3
4
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
18
Homo sapiens
Biosample type
tissue
14
cell line
4
primary cell
Organ
14
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
18
AMP
Genome assembly (visualization)
102
hg19
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent control read length
biosample_type!
tissue
assembly!
GRCh38
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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