Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
367
total RNA-seq
230
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
48
WGBS
31
DNase-seq
25
pCHi-C
13
Hi-C
8
RRBS
5
GRO-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
180
Transcription
Target of assay
3
control
Date released
43
April, 2018
42
July, 2018
40
September, 2020
33
May, 2022
12
February, 2021
3
August, 2018
3
July, 2019
2
June, 2018
1
November, 2018
1
September, 2018
Available data
121
fastq
93
bam
93
bigWig
93
tsv
52
zippedFastqFolder
2
csv
Organism
180
Homo sapiens
Biosample type
180
primary cell
tissue
Organ
69
epithelium
69
pancreas
4
connective tissue
3
brain
Project
95
AMP
85
HPAP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
95
AMP-T2D consortium
85
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
2
audit script error
biosample_type!
tissue
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
180 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
See all biosamples
Download