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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
1
pCHi-C
Assay category
5
3D chromatin structure
Date released
3
October, 2022
1
August, 2018
1
August, 2021
1
March, 2020
Available data
1277
bam
1208
bigWig
970
fastq
774
bed narrowPeak
458
bigBed narrowPeak
377
tsv
157
tagAlign
153
zippedFastqFolder
106
bed broadPeak
106
bigBed broadPeak
63
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3
7
hic
6
bed bedgraph
6
bedpe bed3+
5
hdf5
4
tar
3
cool
3
txt
2
csv
1
vcf
Organism
6
Homo sapiens
Biosample type
tissue
4
primary cell
1
cell line
1
in vitro differentiated cells
Organ
4
epithelium
3
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
1
vasculature
1
vein
Project
3
AMP
3
HPAP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
biosample_type!
tissue
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
6 results
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Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
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