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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
Assay category
80
DNA binding
Target of assay
395
transcription factor
364
histone
364
histone modification
186
broad histone mark
177
narrow histone mark
156
control
88
recombinant protein
80
RNA binding protein
21
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
32
November, 2017
20
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
74
bam
73
bed narrowPeak
73
bigWig
68
fastq
67
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
1
tar
Organism
80
Homo sapiens
Biosample type
59
cell line
tissue
11
in vitro differentiated cells
10
primary cell
Organ
50
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
80
AMP
Genome assembly (visualization)
72
hg19
68
GRCh38
Lab
74
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
3
inconsistent control run_type
biosample_type!
tissue
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
cell line
HepG2
48
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
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