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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
25
transcription factor
23
histone
23
histone modification
13
chromatin remodeller
12
narrow histone mark
11
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
19
November, 2017
11
August, 2017
11
December, 2017
5
November, 2018
2
February, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
25
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
48
Homo sapiens
Biosample type
24
cell line
17
in vitro differentiated cells
tissue
5
primary cell
2
stem cell
Organ
24
liver
6
connective tissue
5
epithelium
4
pancreas
3
embryo
Project
48
AMP
Genome assembly (visualization)
48
hg19
46
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
48
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
cell line
HepG2
24
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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