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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
86
ChIP-seq
73
single cell RNA-seq
49
ATAC-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
267
Transcription
86
DNA binding
78
DNA accessibility
41
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
134
May, 2022
81
February, 2023
59
September, 2020
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
194
bigWig
184
bam
153
zippedFastqFolder
124
fastq
98
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
493
Homo sapiens
Biosample type
484
primary cell
tissue
11
cell line
2
stem cell
Organ
150
epithelium
150
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
279
HPAP
213
T1D
4
community
1
ITG
Genome assembly (visualization)
195
GRCh38
187
hg19
Lab
279
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
biosample_type!
tissue
award.project!
AMP
month_released!
February, 2021
BIOSAMPLE
ASSAY
497 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
25
1
Langerhans cell
73
21
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 37 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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