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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
64
total RNA-seq
22
ChIP-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
whole genome sequencing assay
Assay category
100
DNA accessibility
64
Transcription
22
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
64
October, 2019
62
November, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
August, 2021
48
July, 2018
43
April, 2018
31
July, 2019
28
December, 2018
23
January, 2019
16
March, 2020
16
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
5
December, 2019
5
March, 2023
5
May, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
December, 2017
3
June, 2018
2
January, 2018
2
October, 2018
Available data
115
bigWig
102
bam
63
tsv
17
bed narrowPeak
4
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
196
Homo sapiens
Biosample type
tissue
151
primary cell
45
cell line
in vitro differentiated cells
Organ
36
liver
8
embryo
6
epithelium
2
kidney
2
pancreas
Project
151
AMP
45
T1D
Genome assembly (visualization)
116
hg19
56
GRCh38
Lab
117
AMP-T2D consortium
45
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
biosample_type!
tissue
in vitro differentiated cells
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
pCHi-C
whole genome sequencing assay
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
9
18
2
1
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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