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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
3
MeRIP-seq
3
single cell RNA-seq
Assay category
113
DNA binding
3
Transcription
Target of assay
371
transcription factor
277
histone
277
histone modification
142
broad histone mark
135
narrow histone mark
119
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
59
November, 2017
13
August, 2017
12
October, 2019
8
June, 2019
5
August, 2021
3
February, 2021
3
January, 2019
3
July, 2019
3
May, 2021
3
November, 2018
3
November, 2020
2
November, 2019
1
December, 2017
1
May, 2019
Available data
109
bam
79
fastq
23
bigWig
6
tagAlign
3
tsv
1
bed bed3+
Organism
119
Homo sapiens
Biosample type
tissue
83
cell line
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
61
liver
26
epithelium
23
pancreas
6
blood
6
bodily fluid
6
brain
6
kidney
6
vasculature
5
blood vessel
4
heart
3
connective tissue
2
artery
2
musculature of body
2
vein
1
eye
Project
119
AMP
Genome assembly (visualization)
24
hg19
4
GRCh38
Lab
109
AMP-T2D consortium
4
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
13
inconsistent ontology term
biosample_type!
tissue
in vitro differentiated cells
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
cell line
HepG2
60
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
+ See 4 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
2
cerebellar granule cell
2
+ See 14 more…
stem cell
hESC
1
See all biosamples
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