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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
3
DNase-seq
Assay category
685
DNA binding
255
Transcription
74
DNA accessibility
8
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
21
May, 2021
13
February, 2021
12
August, 2021
12
February, 2023
6
November, 2019
6
October, 2019
2
March, 2020
1
August, 2017
1
January, 2018
Available data
34
bed narrowPeak
30
bam
18
bigWig
7
bed bedgraph
6
bed bed3
5
bed bed3+
5
bigBed narrowPeak
3
txt
2
bed broadPeak
2
bigBed broadPeak
1
fastq
1
tsv
Organism
74
Homo sapiens
Biosample type
tissue
primary cell
43
in vitro differentiated cells
31
cell line
Organ
20
epithelium
20
pancreas
18
connective tissue
8
artery
8
blood vessel
8
heart
8
vasculature
1
blood
1
bodily fluid
1
kidney
1
liver
Project
74
AMP
Genome assembly (visualization)
58
hg19
30
GRCh38
Lab
64
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
29
inconsistent ontology term
1
inconsistent replicate
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
DNase-seq
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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