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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
31
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
33
Transcription
31
DNA binding
20
DNA accessibility
2
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
control
10
broad histone mark
10
narrow histone mark
3
nucleotide modification
2
transcription factor
1
RNA binding protein
Date released
26
February, 2021
24
May, 2021
16
November, 2019
15
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
66
bam
58
bigWig
34
tsv
23
bed narrowPeak
7
bigBed narrowPeak
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
94
Homo sapiens
Biosample type
tissue
primary cell
92
cell line
3
in vitro differentiated cells
Organ
416
liver
103
epithelium
98
connective tissue
95
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
61
blood
61
bodily fluid
37
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
91
AMP
4
T1D
Genome assembly (visualization)
60
hg19
57
GRCh38
Lab
89
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
primary cell
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
95 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
15
19
6
2
1
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
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