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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
685
ChIP-seq
249
total RNA-seq
71
ATAC-seq
15
pCHi-C
8
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
685
DNA binding
Target of assay
410
transcription factor
152
histone
152
histone modification
118
control
89
recombinant protein
76
RNA binding protein
76
broad histone mark
75
narrow histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
67
August, 2017
60
November, 2018
46
December, 2017
44
May, 2021
39
August, 2021
27
December, 2018
24
February, 2018
23
October, 2019
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
Available data
614
bam
543
fastq
528
bigWig
504
bed narrowPeak
367
bigBed narrowPeak
60
tagAlign
58
bed broadPeak
58
bigBed broadPeak
22
bed bed3+
3
tar
Organism
685
Homo sapiens
Biosample type
tissue
484
cell line
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
393
liver
67
connective tissue
60
blood
60
bodily fluid
37
epithelium
31
pancreas
22
embryo
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
683
AMP
2
T1D
Genome assembly (visualization)
529
hg19
469
GRCh38
Lab
630
AMP-T2D consortium
37
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
Audit category:
32
inconsistent ontology term
1
inconsistent control
Audit category:
19
missing controlled_by
Audit category:
45
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
685 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
+ See 8 more…
stem cell
hESC
3
See all biosamples
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