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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
663
ChIP-seq
235
total RNA-seq
71
ATAC-seq
15
pCHi-C
8
Hi-C
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
663
DNA binding
Target of assay
407
transcription factor
140
histone
140
histone modification
111
control
89
recombinant protein
76
RNA binding protein
72
broad histone mark
67
narrow histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
67
August, 2017
60
November, 2018
44
May, 2021
39
August, 2021
33
December, 2017
27
December, 2018
23
October, 2019
18
January, 2019
15
February, 2018
13
November, 2019
8
February, 2021
1
March, 2020
Available data
592
bam
521
fastq
514
bigWig
490
bed narrowPeak
367
bigBed narrowPeak
60
tagAlign
58
bed broadPeak
58
bigBed broadPeak
19
bed bed3+
3
tar
Organism
663
Homo sapiens
Biosample type
tissue
484
cell line
primary cell
176
in vitro differentiated cells
3
stem cell
Organ
393
liver
67
connective tissue
60
blood
60
bodily fluid
37
epithelium
31
pancreas
embryo
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
661
AMP
2
T1D
Genome assembly (visualization)
514
hg19
454
GRCh38
Lab
608
AMP-T2D consortium
37
Kyle Gaulton, UCSD
18
Bing Ren, UCSD
Audit category:
28
inconsistent ontology term
1
inconsistent control
Audit category:
18
missing controlled_by
Audit category:
42
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
primary cell
organ_slims!
embryo
BIOSAMPLE
ASSAY
663 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
hepatocyte
15
definitive endodermal cell
8
+ See 6 more…
stem cell
hESC
3
See all biosamples
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