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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
685
ChIP-seq
249
total RNA-seq
71
ATAC-seq
15
pCHi-C
8
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
8
3D chromatin structure
Date released
3
October, 2019
2
March, 2020
1
August, 2021
1
December, 2018
1
November, 2019
Available data
6
bedpe bed3+
6
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Organism
8
Homo sapiens
Biosample type
tissue
primary cell
4
cell line
4
in vitro differentiated cells
Organ
2
liver
2
pancreas
1
epithelium
Project
8
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
8 results
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Hi-C
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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